PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097231.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 214aa    MW: 23301.6 Da    PI: 6.4971
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260964e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++      ++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA  r+ +Pv+Gavg++++++++++q+
  XP_011097231.1   2 SCNGCRVLRKGCSESCILRPCLqwiesVEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6*********************9888777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_011097231.1  97 AVETVLR 103
                     *998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4951107IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESVE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGSVKSI PELLGGASEP  120
DDASECTDMF RLQDPGLSSE PKVQKRRRSP DEPAKVMQLA DLDLSLTPGF QDKRSSTLPE  180
KRRPVSPSMY SEESVTTTCG DQPATEIKLL NLFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146PKVQKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097231.11e-158PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-83LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SN239e-84LBD38_ARATH; LOB domain-containing protein 38
TrEMBLK4BD511e-109K4BD51_SOLLC; Uncharacterized protein
STRINGSolyc02g092550.2.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-85LOB domain-containing protein 38